PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma161g00440.1
Common NameZOSMA_161G00440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 141aa    MW: 15983.5 Da    PI: 10.2876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma161g00440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.1e-0970110954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR++i +++  L++l+P       +K++ a++L +A++Y+k L
  Zosma161g00440.1  70 ARHRREKISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 110
                       699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.10461110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1566125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-1466119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-1467116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.40E-967114No hitNo description
PfamPF000102.2E-671110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MNMGTRIQQQ QQLVLLDGGE EGVEEERLGV MKEMMYKIAA MQPVDIDPLT VKKPKRRNVR  60
ISDDPQSVAA RHRREKISER IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQVDELQSW  120
PQAQQLVGRA SSMTTGLGYS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524301.13e-56PREDICTED: transcription factor HEC3-like
SwissprotO813131e-45IND_ARATH; Transcription factor IND
TrEMBLA0A0K9PUG52e-98A0A0K9PUG5_Z
STRINGGLYMA05G32410.29e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-46bHLH family protein